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GⅡ型诺如病毒逆转录环介导等温扩增技术检测方法的建立

Development of a Reverse Transcription Loop-Mediated Isothermal Amplification Assay for the Detection of Genogroup Ⅱ Norovirus

  • 摘要:
    目的 建立基于逆转录环介导等温扩增技术(reverse transcription loop-mediated isothermal amplification,RT-LAMP)的GⅡ型诺如病毒快速检测方法。
    方法 通过NCBI数据库和在线程序Primer Explorer V5筛选诺如病毒基因保守区并设计特异性引物,经实验条件优化(包括反应温度、MgSO4 浓度、dNTP浓度等)构建检测体系,评价该方法的检测灵敏性和特异性。利用优化后的方法检测临床粪便样本,并与商品化试剂盒进行比较。
    结果 所建立的方法特异性良好,与腺病毒、人肠道通用型病毒及轮状病毒无交叉反应;灵敏性较好,检测限为51 copies/μL;检测时间为45 min;34份诺如病毒感染患者粪便样本与商品化试剂盒检测结果一致性较好,灵敏度为100%,特异度为83.33%,ROC曲线下面积为0.97 (95%CI:0.92~1.00),表明该方法具有较高的准确性和可靠性。
    结论 本研究成功建立了基于RT-LAMP的GⅡ型诺如病毒检测方法,灵敏性、特异性及实际样本检测效果良好,适用于基层实验室和现场快速检测。

     

    Abstract:
    Objective To establish a rapid testing method for genogroup Ⅱ (GⅡ) norovirus based on reverse transcription loop-mediated isothermal amplification (RT-LAMP).
    Methods The conserved region of norovirus was screened using the genomic data from the National Center for Biotechnology Information (NCBI) database, and specific primers were designed using the online software Primer Explorer V5. The testing system was established through optimization of experimental conditions, including reaction temperature, MgSO4 concentration, dNTP concentration, etc. The sensitivity and specificity of the method were evaluated. The optimized testing method was used to analyze clinical stool samples, and the results were compared with those of a commercially available kit.
    Results The established testing method exhibited high specificity, showing no cross-reactivity with adenovirus, human enterovirus, or rotavirus. The testing method also exhibited high sensitivity, with a detection limit of 51 copies/μL. The turnaround time was 45 min. For 34 stool samples from patients infected with norovirus, the testing results were highly consistent with those of the commercial kit, with a sensitivity of 100%, a specificity of 83.33%, and an area under the receiver operating characteristic (ROC) curve of 0.97 (95% CI: 0.92-1.00), indicating the high accuracy and reliability of the testing method.
    Conclusion In this study, we successfully developed an RT-LAMP-based testing method for GⅡ norovirus, which exhibits excellent sensitivity, specificity, and practical performance in clinical sample testing, making it suitable for use in primary care laboratories and for rapid testing in field settings.

     

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