欢迎来到《四川大学学报(医学版)》

心房颤动中免疫细胞与衰老相关生物标志物的鉴定及分子机制研究

Identification and Underlying Mechanisms of Immune Cell- and Senescence-Related Biomarkers in Atrial Fibrillation

  • 摘要:
    目的 探讨免疫细胞(immune cells, ICs)与衰老相关生物标志物在心房颤动(atrial fibrillation, AF)中的分子机制。
    方法 本研究通过加权基因共表达网络分析(WGCNA)在GSE2240数据集获得免疫细胞相关基因(immune cell-related genes, ICRGs)。随后,将ICRGs、衰老相关基因(senescence-related genes, SRGs)和通过AF组与窦性心律(sinus rhythm, SR)组差异表达分析得到的差异表达基因(differentially expressed genes, DEGs)取交集,筛选出候选基因。进一步利用最小绝对收缩与选择算子(LASSO)算法获得生物标志物并在GSE115571数据集中进行验证。接着,进行基因集富集分析(GSEA)、GeneMANIA网络构建、分子调控网络构建以及分子对接实验,以探讨AF中生物标志物的分子机制。8只87周龄、体质量632~656 g的Sprague-Dawley雄性大鼠随机分为AF组和SR组(n=4),制备AF大鼠模型,RT-qPCR检测大鼠心肌组织中肌球蛋白轻链激酶(myosin light chain kinase, MYLK)和胰岛素样生长因子结合蛋白2(insulin-like growth factor binding protein 2, IGFBP2)mRNA的表达水平。
    结果 本研究识别出2个生物标志物MYLK和IGFBP2。GSEA分析显示,MYLK显著富集于嗅觉传导通路,IGFBP2显著富集于细胞外基质-受体相互作用通路。GeneMANIA网络显示,这些生物标志物与20个基因在功能上具有相似性。此外,MYLK受28个转录因子(TFs)和41个miRNA调控,而IGFBP2受63个TFs和包括TAF1、MIRT020526在内的4个miRNA调控。药物预测表明,仅MYLK与3种药物存在潜在相互作用,其中,与MYLK结合能力最强的药物为tozasertib,其结合能为-7.8 kcal/mol。RT-qPCR结果显示,AF组大鼠心肌组织中IGFBP2 mRNA表达上调(P<0.05),MYLK mRNA表达下调(P<0.05)。
    结论 本研究鉴定出2种与AF相关的生物标志物MYLK和IGFBP2,并揭示了其潜在的分子机制,为AF的研究提供了新的理论依据。

     

    Abstract:
    Objective  To investigate the molecular mechanisms of immune cells (ICs)- and senescence-related biomarkers in atrial fibrillation (AF).
    Methods  In this study, immune cell-related genes (ICRGs) were obtained using weighted gene co-expression network analysis (WGCNA) based on the GSE2240 dataset. Subsequently, the intersection of ICRGs, senescence-related genes (SRGs), and differentially expressed genes (DEGs) derived from differential expression analysis between AF and sinus rhythm (SR) groups was obtained to screen candidate genes. Biomarkers were further identified using the least absolute shrinkage and selection operator (LASSO) algorithm and validated in the GSE115571 dataset. Gene set enrichment analysis (GSEA), GeneMANIA network construction, molecular regulatory network construction, and molecular docking were performed to investigate the molecular mechanisms of the biomarkers in AF. A total of 8 male Sprague-Dawley rats of 87 weeks old and weighing 632-656 g were randomly assigned to the AF group and the sinus rhythm (SR) group (n = 4 per group). An AF rat model was established. The mRNA expression levels of myosin light chain kinase (MYLK) and insulin-like growth factor binding protein 2 (IGFBP2) in rat myocardial tissue were measured using reverse transcription quantitative polymerase chain reaction (RT-qPCR).
    Results  Two biomarkers, MYLK and IGFBP2, were identified. GSEA revealed that MYLK was significantly enriched in the olfactory transduction pathway, whereas IGFBP2 was significantly enriched in the extracellular matrix-receptor interaction pathway. The GeneMANIA network demonstrated functional similarity between these biomarkers and 20 other genes. In addition, MYLK was regulated by 28 transcription factors (TFs) and 41 microRNAs (miRNAs), whereas IGFBP2 was regulated by 63 TFs and 4 miRNAs, including TAF1 and MIRT020526. Drug prediction analysis indicated that only MYLK had potential interactions with 3 drugs, among which Tozasertib exhibited the strongest binding affinity to MYLK, with a binding energy of -7.8 kcal/mol. RT-qPCR results showed that IGFBP2 mRNA expression was upregulated and MYLK mRNA expression was downregulated in myocardial tissue of rats in the AF group compared with the SR group (both P < 0.05).
    Conclusion  In this study, MYLK and IGFBP2 are identified as AF-related biomarkers, and their potential molecular mechanisms are elucidated, providing new theoretical insights into AF research.

     

/

返回文章
返回